Senior Design Team sample • Sample SD Site

Project Overview

To avoid high cost and to provide safety during exploratory stages, most manufacturers of drugs run simulations of molecular interactions and analyze the movements of atoms (in the context of multiple molecules that they belong to). The main purpose is to detect whether certain events of interest occur – which, in turn, would mean that certain properties of the drug under development are satisfied (or not). For this project's purposes, our event of interest is the formation of a Hydrogen Bond (HB) during the evolution of the chemical compound, and its persistence for a set amount of time. Our project aims to develop a system that will allow users to analyze the simulation datasets and: (1) detect the occurrence of such long-lasting HBs; (2) provide a detailed report to the user; (3) provide a visual representation of the persistent HBs, if they occur within the data set.




UI Prototype

Visualization Prototype



Team Members

Ayden Albertsen

Frontend Leader

Benjamin Hall

Backend Leader

Ben McClannahan

Fullstack Developer

T.J. Thielen

Git Leader/Scrum Master

Benjamin Riemersma

Developer/Communicator




Weekly Reports

Report 1
Report 2
Report 3
Report 4
Report 5




Design Documents

Design Doc 1
Design Doc 2
Design Doc 3
Design Doc 4
Design Doc 5
Final Design Document




Midterm Peer Review

Peer Review Video




Final Design Deliverables

Final Demo Video
Final Report
Final Poster
Final Presentation